Sequence Assembly with CodonCode Aligner
CodonCode Aligner is an easy-to-use program for sequence assembly, contig editing, and mutation detection. Features include:
- Multiple sequence assembly and sequence alignment algorithms
- Manual and automated sequence editing
- Align contigs to each other and get back to the underlying trace data with a simple double-click
- Reference sequences and difference tables
- Sensitive mutation detection
- Advanced methods for heterozygous indel analysis
- Automation tools: assemble by name & scripting
CodonCode Aligner offers many unique features not found in other programs, but is significantly more affordable.
Get A Free Trial
Download the demo version and get a fully functional 30-day trial. No forms to fill out.
Available for Windows and Mac OS X. Demo versions can be upgraded to the full version by entering a purchased license key.
What's New
Version 3 of CodonCode Aligner adds many new features and performance improvements, including:
- View translations for all samples
- Use translation-based background colors
- Difference tables
- Faster assemblies
- Much more
Learn More
- Take the quick tour
- Look at the tutorials
- More about CodonCode Aligner
- See how CodonCode Aligner can accelerate your DNA sequence analysis in Evolution research
- Read CodonCode Aligner's extensive online help, available through the Help menu and as a PDF help file.
