Sequence Assembly with CodonCode Aligner
CodonCode Aligner is an easy-to-use program for sequence assembly, contig editing, and mutation detection. Features include:
- Multiple sequence assembly and sequence alignment algorithms
- Manual and automated sequence editing
- Align contigs to each other and get back to the underlying trace data with a simple double-click
- Reference sequences and difference tables
- Sensitive mutation detection
- Advanced methods for heterozygous indel analysis
- Automation tools: assemble by name & scripting
CodonCode Aligner offers many unique features not found in other programs, but is significantly more affordable.
Get A Free Trial
Download the demo version and get a fully functional 30-day trial. No forms to fill out.
Available for Windows and Mac OS X. Demo versions can be upgraded to the full version by entering a purchased license key.
What's New
CodonCode Aligner 4.0 released
This version of Aligner includes several new features, including better support for large projects, support for FASTQ and SAM files, an improved, zoomable contig overview with coverage map, the ability to build trees for selection, split contigs by tree, a new function to import subsets of samples, and more.
Special upgrade pricing for customers with expired support agreements is available until May 31, 2012. Contact us for a quote. Customers with current support agreements will continue to receive upgrades free of charge.
Learn More
- Take the quick tour
- Look at the tutorials
- More about CodonCode Aligner
- See how CodonCode Aligner can accelerate your DNA sequence analysis in Evolution research
- Read CodonCode Aligner's extensive online help, available through the Help menu and as a PDF help file.
