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New in CodonCode Aligner Version 2.0
The current version of CodonCode Aligner is 2.0.6, which fixes a number of
bugs present in version 2.0.5 and older. All users of CodonCode Aligner 2.0
should update to this version.
This page describes the most important changes and new features in CodonCode
Aligner version 2.0. Features added in CodonCode Aligner version 1.6
on a separate
page.
All of these new features have been requested by users
- thanks to all who have given us feedback.
- Restriction maps: Find restriction enzyme cut sites and view restriction
maps.
- Trace sharpening: Get a better look at your data with Aligner's
trace sharpening.
- Print preview: See what's being printed instead of wasting paper,
even on Windows.
- Align to reference by name: Quickly form many contigs by aligning
samples to reference sequences.
- Split heterozygous indels: Split heterozygous indel chromatograms
into two new sequences which show the size of your indel.
- Customizable toolbars: Pick the buttons you need for your work -
for each window.
- Improved mutation finding: Quickly confirm or reject mutations,
view confirmed mutations, auto-match low-quality sequences like dye blobs
to the consensus, and define regions to ignore.
- Much more: Change ambiguities to bases, convert low quality bases
to N, exclude the reference from the consensus sequence, support for scripting
(ask us!), duplicate samples, delete selected items from trash, find and
describe mutations in text sequences,
export unphased haplotype sequences, improvements for large reference sequences,
...
Interested? Watch the Flash movie or
go to the download page.
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